PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_012886-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 405aa    MW: 44935.4 Da    PI: 5.234
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_012886-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.32.4e-07220247431
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC. CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkas 31 
                    +h+ +Er RR++iN ++  L+el+P +s
  NNU_012886-RA 220 SHSLAERARREKINARMKLLQELVPGCS 247
                    8************************974 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.17E-8214287No hitNo description
SuperFamilySSF474592.49E-11214300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.306216282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-11216298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-5220247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-5222288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MERISCFDSR SEGCKDDKQE MAEDSFEFGD GILMTENLLQ EATVPGSSFT ALLGLPANQA  60
MELLQDPLSG KPQTVIAPEM WRDSRSGQED MRYTFNCSPT FPTDAALVER ASKFSVFAAA  120
QNSTDKCPVP SNSNENSLKP KSEPADSESN PSSCLVSSDP ATPSENQAST KRKEREKKVK  180
VPAKRSKNVE NESSKAGEAK DGEKLPYVHV RARRGQATDS HSLAERARRE KINARMKLLQ  240
ELVPGCSKVS SLFFVILNES RVIIISGTAL VLDEIINHVQ SLQRQVEFLS MRLAAVTPRI  300
DFSLDSFFAA ESGCVTPSSC PSTVTFEPLM WQQQQNQPLW EGDVLQRQMW ERDDSHSFLA  360
PENFLFSYNS ANSAGSRVVK RSSQQLSIPW GFDVYAVLAE TSRKP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265771.10.0PREDICTED: transcription factor bHLH48-like
TrEMBLD7TI191e-112D7TI19_VITVI; Putative uncharacterized protein
STRINGVIT_08s0007g07870.t011e-112(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.28e-68bHLH family protein